rs49427996 SNP Detail

Summary

• ID
  rs49427996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148795373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTTTTA ATTCTCAGGA
  CTATTCTTTG AGGTCTTGTT TCGTTTTTCC AGGTCTTGGG GGCAGAAGCT AGGGGCATTC
  CTATTCTAGA AGCGTGTATG TTCGCTCTAC GTAAGCGCTC AGCCACCGTG TTACACTCTC
  ATCCTTTCTT ACAGGTACAT TTTAAAGAAG GAAACAACTT ACTTAGCACC CTACAGAGAG
  R
  CAGCAGGCAG AGAAGTAGCA GATGAGCCAC CACTCTTTGT TACACTTTTG AGACCCGGCC
  ACCCTAAGCA TCCAGGCTGG TTTTGAACTT GAGTCTGTCT GTACCCTAGG CAGGTTTTGA
  ACTTGTGATT CTAGGAATCC AGGTTTCCAG ATAACTAGAA CTGCATTCCT GCCCAGCTCT
  GCTGTTCCCA ATCAAAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61098053	NES16608474	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49427996					SNP	A	A	A	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098053	NES16608474	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148795373 () rs orientation: forward

Symbol	Name	Function Class
Gm30575	predicted gene, 30575	within coordinates
Rr587260	regulatory region 587260	1614 bp distal
Rr587261	regulatory region 587261	1016 bp distal
Rr587262	regulatory region 587262	468 bp distal
Rr587263	regulatory region 587263	74 bp proximal