rs49428756 SNP Detail

Summary

• ID
  rs49428756
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:91401028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGT GCTTTCCTGA CAGTTTATGG
  R
  TCCTCCAGCT TTCCATTCTC TGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60293387	NES15791744	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49428756					SNP	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60293387	NES15791744	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:91401028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9653	CpG island 9653	631 bp distal
Nrxn1	neurexin I	529 bp upstream
Rr334029	regulatory region 334029	428 bp distal
Rr340336	regulatory region 340336	within coordinates
Tssr149870	transcription start site region 149870	778 bp upstream
Tssr149871	transcription start site region 149871	742 bp upstream
Tssr149872	transcription start site region 149872	723 bp upstream
Tssr149873	transcription start site region 149873	605 bp upstream
Tssr149874	transcription start site region 149874	571 bp upstream
Tssr149875	transcription start site region 149875	523 bp upstream