rs49428809 SNP Detail

Summary

• ID
  rs49428809
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172695393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCTGGA GAAGCAGAGA
  GGGGTGAACT CGTGGAACTC AGTGGCTGCT CGGTCTCGCA ACTGGTGAGC TCCAGGCTCA
  GTGACAGAAC CCGCCTCAAA GAACAAGATG GAGGGAGAAC AGAGAGGAAG CTCGGAGGCA
  GAGCTCTGGG TGCTCATCCA GAGTGTCTGG GTTCAGTGCC AGCATGCACA CGGAGGGTCT
  S
  GACCACGGAG GGTCTGGACC ACGGAGGATC TCAACTGACC TCACTCCGGT TCCAGGAGAT
  CCAGTGCCTC CTCTGGCCTC TGTGAGCTCT GCCTGCACAC AGACACACAA CAGGCGAACA
  CACCCATGCA CATAAAACAA ATGATAATGA GGAGGAGGAA GAGGAGGAGG AAGAGGGGGA
  GGGATGCAGC TCAAGCGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148324249	ENSMUSSNP5310333	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49428809					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172695393 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	532 bp proximal
Rr571756	regulatory region 571756	757 bp proximal