rs49430217 SNP Detail

Summary

• ID
  rs49430217
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14526610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAGCTCG GCCCATCACG
  TCAGCATTAG AGATAATAAG GACTCTGTCC CTGTAAGCGT CTGTAGAGGA AGTGCACCGT
  GAAGAAGACA CCACTTCTTC TAGTTGCTGT TACTTCGGGC TTGTTGGGGA AATCTTTGGT
  CTTCCTGCCC CTTGCCATAC TAGGGACAGA ACCGATTGTC TTTCCTGTGC ACTAAGACAT
  K
  GTTTGCTGTA CTTAGAGCAA ACCCAACCCT GAAGTGAGAG TCTCCTCAGT GGTAAAGGAG
  CCCTGCCCAA GTTAGGAGTG GCCAGTGGAC TGGCATGCTG CCAGGAACTC TGGCCAAAGC
  AGTGCCCTCC ATAAAACCAC CCCCTCAGTG GCGTGGGTCC TGCCAGATGC CCTTGGCACA
  CCCAGCCTGA CTCCCTGCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62080598	NES17154325	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49430217					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62080598	NES17154325	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14526610 () rs orientation: forward

Symbol	Name	Function Class
Flnb	filamin, beta	within coordinates
Gm62553	predicted gene, 62553	within coordinates
Rr487920	regulatory region 487920	1334 bp distal
Rr487921	regulatory region 487921	1664 bp distal
Rr487922	regulatory region 487922	within coordinates
Rr487923	regulatory region 487923	1368 bp proximal
Tssr124220	transcription start site region 124220	1504 bp downstream