rs49431136 SNP Detail

Summary

• ID
  rs49431136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152607095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTCCTG TCTCCACTCC
  CTTCTCCAAT AAAAGCAGCC TGCTTTGTTC TGCTTGCAAA CTCCCCTTTG GACTATCTGT
  TATCTAAATT TAACCATTGA GATGGGGGGG GGGGGCGCGG AGGCAGGAAC AAATCATGAA
  GGGTCTCCTG GAGAAGTGGG TTGGGGCTGG GCATTAGGCA GGATGGGGGG AAAGACAGGA
  Y
  GGAGAAGAGA AGGCATTCAA GGGAGGCAGT TCAAAGGCAA AAGCACTCTT ATTCAGTCAA
  TTAACAAATC TTTCTTGAGC ACCCATGCAT ACCTAATAGT AAGATCCCAG GCTCGGGGGA
  TGCTGCAGTA TATATGACCA AGTCCTTGGC TTCACAGAGG AGACCTTTCT TCTGTGGAGG
  CCAATAGAGT GAATAATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147974080	ENSMUSSNP4393166	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49431136					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152607095 () rs orientation: forward

Symbol	Name	Function Class
Cox4i2	cytochrome c oxidase subunit 4I2	138 bp downstream
Cpgi12465	CpG island 12465	1287 bp proximal
D2Wsu107e	DNA segment, Chr 2, Wayne State University 107, expressed	1966 bp distal
Rr567459	regulatory region 567459	within coordinates
Rr567460	regulatory region 567460	1143 bp proximal
Rr567461	regulatory region 567461	1492 bp proximal
Tssr26855	transcription start site region 26855	184 bp downstream