rs49431355 SNP Detail

Summary

• ID
  rs49431355
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149213419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTCTTA GATACTCTTT
  TTTTTTTTTT TAAAGACTTA GTTATATATA AGTACACTGT AGCTGTCTTC AGACACAGCA
  GAAGAGGGCA TCAAATCTCA TTACAGATGG TTTTGAGCCA CCATGTGGTT GCTGGATTTG
  AACTAAGTAC CTCTGGAAGA GCAGTCAGTG CTCTTAACCG CTGAGTCATC TCTCCAGCCC
  W
  GAACACTCTT AAAATAGCTC CCAGCACATA GTCTATTTTT TACAGCCTTA GGCATTTCAC
  AGCTAGGCTG GCCTTGAACT TCCTGGCCTT GAACTTCTTG TCTAGCAAGG ATGACCTTCA
  ATTGATTCTT CTCTTCTTCC TCCTGAGTTT TGGGATTAGA TTTGCCATGC CAAGCTCTCC
  TCTCTACTGG GTGTTTGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss60961285	NES16169748	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs49431355					SNP	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961285	NES16169748	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149213419 () rs orientation: forward

Symbol	Name	Function Class
Resf1	retroelement silencing factor 1	within coordinates
Rr380294	regulatory region 380294	1869 bp downstream
Rr380295	regulatory region 380295	within coordinates
Rr641723	regulatory region 641723	1756 bp distal
Rr641724	regulatory region 641724	within coordinates
Tssr59656	transcription start site region 59656	1586 bp downstream