rs49432009 SNP Detail

Summary

• ID
  rs49432009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167197923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTTTGGGA CATACTTCTG TTAGGTGGAG AGATACTCTG
  GTTTCCTTTC CTGATTCACA TCATTATACC CTTAAAAGCT GACTCCCCAC TGGTCTGCTC
  Y
  ACTTTTGGTT ATATGAGCTG GTCACATGGA GAAAGCAGCA GCTACAGTCT GAGGGAGGCC
  AGGGCAGGAA GGTGTCACAG CAGAAACAGC AGCAGAGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146037731	ENSMUSSNP1834282	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49432009					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167197923 () rs orientation: forward

Symbol	Name	Function Class
Aldh9a1	aldehyde dehydrogenase 9, subfamily A1	1823 bp downstream
Mgst3	microsomal glutathione S-transferase 3	1612 bp downstream
Rr396523	regulatory region 396523	151 bp downstream
Rr422697	regulatory region 422697	342 bp distal
Rr422698	regulatory region 422698	269 bp distal
Rr422699	regulatory region 422699	212 bp distal
Rr422700	regulatory region 422700	within coordinates
Rr422701	regulatory region 422701	61 bp proximal