rs49432342 SNP Detail

Summary

• ID
  rs49432342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55521178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCGAGGTG GCCTCCCCAG
  TGTCCTCAGG TACCAGAAGT CCCCTTGGAG CCACTTCCTA AGAATGAAGC GTGACAAACT
  AAAGCCAGAG ACCACTATGG GTTAGGACTG TCACCGGCCA CCACACCCTT CCTCATCCTT
  TCTTCCCCTT TTCCTTCATT CACTCAGCAG GGCTCCTCGA GCAGAGGTGA GAATCAGGGT
  Y
  ACCACTGAAC CTTACTTCTC CTTGTCTTGT AGCCTGTGTA AGTCATAGCT GTGGCTCTAG
  ACCCCACTTT GCCCTCTTTA GCCTCCCAGC AGCCCCCAGA GGCTGGGAAT CGGAGCCTAG
  CACTCCCCTG GGGGAAATGG GCTCAAGTAA AACCAGCTAT TTCAGATTCC CAAATGACTG
  AGCAGGAATT GGGCTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61806356	NES17743779	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49432342					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806356	NES17743779	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55521178 () rs orientation: forward

Symbol	Name	Function Class
Rgs14	regulator of G-protein signaling 14	within coordinates
Rr369714	regulatory region 369714	921 bp upstream
Rr480447	regulatory region 480447	1758 bp distal
Rr480448	regulatory region 480448	932 bp proximal