rs49433626 SNP Detail

Summary

• ID
  rs49433626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCAAGGG ACAGCAGGGA
  GGAGGGTAGA GAAGGAGAGG GCAGGACTAG GGAGGGCAAA GGAGAGGAGA GGGGAGGGGA
  TAGAGGAGGG AGTAAAGCAG GGAGGAGGGG TACCAGGAGG AGGAGGAGGA TAAGGGAGGA
  GTGGCAGGGA GAGGAGATGA AGCAGACTCA TGGTAAGTAC TGGGCATCCT TCACGCCTAT
  R
  ACCCAGCAGG AAGGTGTTTT GTCCACCTAC ATGAGAACTT GGGGTAGAGA CAAGGCCAGG
  ACACAGTCAT ATCTAGCTGT TCACCCCTGT GCTTTTGTGG AAAACTGTCT TGGTGTGTTA
  CTCCAAAGTC CTCTGCCACC TGCCACCGCT GCAGCTCTGT GGGACTTCTC ACTTAAGGGC
  AAGATTGAGC TGCATAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52651858	NES15471999	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49433626					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651858	NES15471999	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990094 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	164 bp upstream
Cpgi5821	CpG island 5821	135 bp distal
Gm36529	predicted gene, 36529	within coordinates
Tssr123158	transcription start site region 123158	259 bp upstream
Tssr123159	transcription start site region 123159	221 bp upstream
Tssr123160	transcription start site region 123160	192 bp upstream
Tssr123161	transcription start site region 123161	165 bp upstream