rs49434343 SNP Detail

Summary

• ID
  rs49434343
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53376122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGATTTA GTGCTTGGCT
  ATAAATGGCT CTATTACAGA TTCCTTCCCT CCGAGACTAT CCTTTAACAT GGGAATTTAG
  AAGGGGCAGT GGCTTTCCTA GATGCACTGC ACTTATTTTT AACAGTGTGT TGGGAGGCTG
  AACTGCCCTG TGCTAAGAGC GCTGGGCTGA TAGAAGGAAA ATAGGGACTG ACACAAACAG
  K
  TGAACTCAGT GGCAACCTTT TCCGCTACCC TTGCTGCTAA GCATAACACA ATGACTAAGT
  TATAAAGAAA AACACCACAG CAGTTTTCAG TCTCACACGT ACAGGTGTCA GGGATTTTTT
  TTTTTTTTTT AAGTTAAAAG TTTACAGATG CAAATGGAGT TCACAGCTCA CACCCTTTCT
  TCAGCCTCTG CAGTGAAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137751759	ENSMUSSNP6328717	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49434343					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53376122 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	within coordinates
Rr267617	regulatory region 267617	1880 bp proximal