rs49435562 SNP Detail

Summary

• ID
  rs49435562
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126773110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTTCAGAC CCTGTTTGGG GGAGGCCAAG TACTTCAGGG
  ACCATACCTA AAACAAGCTT GCTAAATAGG TCAGTGGTGG CACAAGCCTT TAAGCTCGGC
  A
  CTTAGAGGAG GCAGAGGCAG GGGGATCTCT GTGTGTTTGA AGTCAGCCTG GTCTACAGAG
  TGAGTTCCAG GACAGCCAGG GCTACAGAGA AAAAAAAAG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147514284	ENSMUSSNP563292	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49435562					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126773110 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1577 bp proximal
Gm75308	predicted gene, 75308			1503 bp upstream
Rr564422	regulatory region 564422			1139 bp proximal
Rr564423	regulatory region 564423			1865 bp proximal
Rr564424	regulatory region 564424			1898 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			711 bp downstream
Tssr26085	transcription start site region 26085			1803 bp downstream
Tssr26086	transcription start site region 26086			1932 bp downstream
Tssr26087	transcription start site region 26087			1963 bp downstream