rs49435599 SNP Detail

Summary

• ID
  rs49435599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96681196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCGGGCT GGGCTTGATG
  GCATTCATGT AGCCCTTGGG AGCGGAAACA GGACGATCAG GAGTTTAAAG CCTTGCCTGG
  CCACCAGGGG AGTCAAGAAA GGGTGAAAAG GCCACTTTGT GCCTTGTAAT GGGTCTTCAG
  TGTGAGTTGG GAGGCTGTGG AAGAACACGT GTAAGGCAAG ACTCATCCAA TGAAAGAGAT
  Y
  TGTTCTTTGT GCGTAAGCCT GGGGGCCTCA GTTTACCTCT CAGGATCCAG GTAAAGGTGG
  AAAGAGCGAG CAGACTTCAC AGAATTGCCC TCTGAGCTAC AAATTAGGGA AATGGCAGGG
  ACCCTCGAAA GCAGGTGCAT GCCCACCGGC AGCGAGAATA TTTTTATTTA AAAAGCAGTA
  TAGAAATATA GAACTCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132687359	ENSMUSSNP5024701	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49435599					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96681196 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			Intron
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			559 bp distal
Rr455508	regulatory region 455508			1111 bp distal
Rr455509	regulatory region 455509			within coordinates
Rr455510	regulatory region 455510			343 bp proximal
Rr455511	regulatory region 455511			1142 bp proximal
Tssr104569	transcription start site region 104569			1224 bp downstream
Tssr104570	transcription start site region 104570			1164 bp downstream
Tssr104571	transcription start site region 104571			1146 bp downstream
Tssr104572	transcription start site region 104572			1116 bp downstream
Tssr110346	transcription start site region 110346			1362 bp upstream