rs49435964 SNP Detail

Summary

• ID
  rs49435964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:94885674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGGACAG AAGCTGACAA
  AATCAAAACA ACAACAACAA CAATGAAAAT AAAGAAAAGA AAAAGAAAAG AAAAGGAACC
  CCCCAAATAT TCACAACAAT AGCAAGTAAA CAATAGAATT AGATAGCTCT GCTTTTGTGT
  GTTTAATCAG CAGAGGGATG GTGAAATGGC TGACCACGTA AAGCAATTGC TAACAAGTCT
  R
  AAGACCTGAG TTTAATCCTC AGGACCACAT GGAATGAAAG TATGGATGGC TCTGTCTTAG
  GGTTTTACTA CTGTGAACAG ACACCATGAC CAAGGCAACT CTTATAAGGA CAACATTTAA
  TTGGGGCTGG CTTACAGGTT CAGAGGTTCA GTCCATTATC ATCAAGGCGG GAGCATGGCA
  GCATCCAGGC AGACATGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63596435	NES17038048	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49435964					SNP	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63596435	NES17038048	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:94885674 () rs orientation: forward

Symbol	Name	Function Class
Gm23129	predicted gene, 23129	655 bp upstream
Gm52203	predicted gene, 52203	808 bp downstream
Rr391133	regulatory region 391133	822 bp downstream
Tmem117	transmembrane protein 117	within coordinates