rs49436610 SNP Detail

Summary

• ID
  rs49436610
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79615767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTCCCCCA TGCCTCTTTG GGGAGGTCCT AGTAGAAACC
  AGTAATGGAT GCATCCAGTA ATTGTGCATC ACGGTGCACC TGGACTCCAG TGACATGTGG
  S
  AACCGCACTC GTGTGTGCTC TGTGTCCTCA GATTCCTGCG ACGGAGTGGA GTGCGGCCCC
  GGCAAGGCGT GCCGCATGCT GGGGGGCCGT CCACACTGCG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52386768	NES15268972	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49436610					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386768	NES15268972	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79615767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1811	CpG island 1811	within coordinates
Fstl3	follistatin-like 3	within coordinates
Prss57	serine protease 57	1541 bp downstream
Rr225110	regulatory region 225110	1366 bp distal
Rr225111	regulatory region 225111	within coordinates
Rr402023	regulatory region 402023	114 bp upstream
Tssr94390	transcription start site region 94390	1039 bp upstream
Tssr94391	transcription start site region 94391	1219 bp upstream