rs49438120 SNP Detail

Summary

• ID
  rs49438120
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113396054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGCTTGC TCTCTCTGGC
  TTGCTCAGCT ACGTTTCTTT TTCCCCTTAT CTATCTATCT TTCTATCTGT CTGTCTGTCT
  GTCTGTCTGT CTGTCTGTCT GTCTGTCTGT CTATCTGTCT ATCTAATCTA TCCATTCATT
  TGTTCACTTA ACATCATTCC AGTTACAGCT GTCTCCTTTC TCTCCTCCCA GTCCCAGCCT
  M
  ACAAGTCCCT CCAACCATTA CCCTTTGCCC ATCTCCTCAG AGATGGGGAG CCCCCCTGGG
  GTATCATTCT GCCTAGGGAC ATCAAGTCAC AGCAGGACTA AGCACATCCT TTCCTACTAA
  GGCCAAACAA GGCAGCCCAA GCAGGGGAAG GGGATCCAAT GGCAGGCAAC AGAGTCAGAG
  ACAGCTCCTG CTCCAAATGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138742504	ENSMUSSNP2656323	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49438120					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113396054 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	1896 bp upstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Tssr118019	transcription start site region 118019	1993 bp upstream
Tssr118020	transcription start site region 118020	1948 bp upstream
Tssr118021	transcription start site region 118021	1831 bp upstream
Tssr118022	transcription start site region 118022	1802 bp upstream
Tssr118023	transcription start site region 118023	1639 bp upstream