rs49438779 SNP Detail

Summary

• ID
  rs49438779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:106803843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTACAGAG GGATCCACTG
  CTGGAGTGAA CAAGCTTGCA GCCGCCGGCA ACTTAGATAA ATAACTGCTA TATGTGGTTT
  TCTGTGACCA TTTGCAGGCC ACTTTGAGGA CATTTTGTCA GAGAACAGTA TAAGTGACCA
  GACCAAAATC CTTGTGGTTA ATGCTGCCTA CTTTGTTGGA AAGTGGATGA AGAAATTTCC
  R
  GAATCAGAAA CAAAAGAATG TCCTTTCAGA ATCAGCAAGG TATGTGCAGC GTGTGAAGCA
  GGAAGTAGAG TCCAAACACA TGGCAGTAGA GCAGGGTACA GGAATGAATC TCTGTGCAGA
  AACCAAAGGA GGAAAAAGGA GAGAAAGCAA GCAAACAAAG CAAACTAGAG GCCACCGGAT
  TGTCAGGAAG TCTTGGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60780040	NES16424382	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49438779					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60780040	NES16424382	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:106803843 () rs orientation: forward

Symbol	Name	Function Class
Rr18766	regulatory region 18766	within coordinates
Rr371817	regulatory region 371817	within coordinates
Serpinb5	serine (or cysteine) peptidase inhibitor, clade B, member 5	within coordinates