rs49438949 SNP Detail

Summary

• ID
  rs49438949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118785535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC TAGTGGGCAT GAAGCTCTGT
  Y
  TTGAACCAGT GCCATACAAG ACCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145804473	ENSMUSSNP3249432	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49438949					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118785535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19631	CpG island 19631	1519 bp distal
Cpgi19632	CpG island 19632	753 bp distal
Gm73654	predicted gene, 73654	104 bp downstream
Gpr139	G protein-coupled receptor 139	1774 bp upstream
Rr381384	regulatory region 381384	within coordinates
Rr654600	regulatory region 654600	1390 bp distal
Rr654601	regulatory region 654601	249 bp distal
Rr654602	regulatory region 654602	18 bp proximal
Rr654603	regulatory region 654603	255 bp proximal
Tssr74477	transcription start site region 74477	1766 bp upstream
Tssr74478	transcription start site region 74478	1740 bp upstream
Tssr74479	transcription start site region 74479	1693 bp upstream