rs49440381 SNP Detail

Summary

• ID
  rs49440381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98885787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGTTTCA GGAAACTGCA
  AAAGGTCTGT GTTTATTGAT TGTTATCTGT GAGAGAAAGT GTAGACACCG TCAGAAAACT
  CTTCACTATT CAGATATTTT CTTCTGTCTT CCGTCATGGT AGGAAGGAGG CAGGAGGATG
  GTCTAAGAAG CCACCCCCAG ACTCACCCCA GCCTCATTTC TGCATTATGG GCTCTTGCTG
  Y
  TAGATATTTG TCATCTTTGT AAATGTGTAG AGGAAAGTCG GGCAGTGGTT CAATCAGTCA
  GAACCACTCT GGGCTGGGGA TTTAGCTCAG TGATTTCAAC AATAGAATCT TTATCTAGCG
  CGTGCCAAAA CCCTGGACTC GGTCTTCTGC AGGGAAAGAA TAAAAGCAAA CAAAACCAAA
  ACTCACTGCA CACATGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61685133	NES17645800	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49440381					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61685133	NES17645800	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98885787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	880 bp proximal
Rr403444	regulatory region 403444	689 bp upstream
Rr470976	regulatory region 470976	556 bp proximal
Rr470977	regulatory region 470977	882 bp proximal
Tssr114655	transcription start site region 114655	1003 bp upstream
Tssr114656	transcription start site region 114656	1039 bp upstream
Tssr114657	transcription start site region 114657	1092 bp upstream
Tssr114658	transcription start site region 114658	1116 bp upstream
Ttc8	tetratricopeptide repeat domain 8	1046 bp upstream