rs49440600 SNP Detail

Summary

• ID
  rs49440600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24728949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCACCTT GTGCCACCAG
  CCTCCCCCTG CATCCCCCAC CCCACCATCT CGCTCTCTAC CCCCACACTG CAATCACCTG
  CCTATTCTGC TCATCCATCC AACAGATCTT TAAATATTTA CTGAACCCCC TTAGTTGGCC
  AAGCAGGTGG GGCAAAGCCT CATGAAAGAA CAATAAGATG CTGAGCCCTG AGGAGTGGAG
  Y
  GGCGAATGTT TTCTTCATGG TGGAATAAAA TTCCATTGTG TGGGTATAGA AAGGGGCCCA
  TGGGGGAAAG GAAAAGCGGG CTAGCTAGAT TGTATGAAGC CCCATGTTCA GCCCCCAGTT
  CTAGGAGAAA AAAAAACTAA AGTAAATAAT AGGTGAGATG AAAGACTTTA AAAGGGGGCA
  AGAGGAGAGG TAGGGTAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60981545	NES16149978	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49440600					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60981545	NES16149978	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24728949 () rs orientation: forward

Symbol	Name	Function Class
Grik5	glutamate receptor, ionotropic, kainate 5 (gamma 2)	within coordinates
Tssr71157	transcription start site region 71157	487 bp downstream