rs49441684 SNP Detail

Summary

• ID
  rs49441684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17814894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGAC CGGCCGGAGC GCAAGCAGCG
  R
  CCGGGCGCCC CCTCTGCTGA ACCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146130694	ENSMUSSNP3552250	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss325730790	CHEV_19_17912020	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49441684					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17814894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	1260 bp distal
Cpgi10666	CpG island 10666	within coordinates
Pcsk5	proprotein convertase subtilisin/kexin type 5	within coordinates
Rr544885	regulatory region 544885	within coordinates
Rr544886	regulatory region 544886	46 bp proximal
Rr544887	regulatory region 544887	92 bp proximal
Tssr158513	transcription start site region 158513	90 bp downstream