rs49441952 SNP Detail

Summary

• ID
  rs49441952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51444710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAATATT CGATCTAACT
  TCTAATTCAC GTAAACTTTC TTAGATTTTC TTCAAAAAAA TTCAGAAAAA CCATACCCAG
  CTCTTAGGTC ATTTAAAGGG TATTAAAGAA TTCTTTTGTA ATTCATTAAA TTCTACAACC
  CAAGTCCAAA ATTTACTACT TTTTAGATTT AAAAAAAATT TAAAAAACCT GTTTCCAAAT
  Y
  CACCACTTCC AAGATTCAGT TTCTGAAAAG TGGCATATTT GCTTTTCCCT GAGCTGCCCC
  CTCTGGTGTT AATTGTAAGT ATCTCAAGAT GAAAAAAAAA AATCCTGCAA CTCTGAAACA
  AGCTCCATGA AGAATGCTGA AACTCCAGAT ATCACCTTAA ATCTGGTTTT GTCAGGCACT
  TAATACTGGC TTTCCAATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133189239	ENSMUSSNP3278693	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49441952					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51444710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17402	CpG island 17402	1115 bp proximal
Gm67572	predicted gene, 67572	1700 bp upstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	within coordinates
Rr379347	regulatory region 379347	585 bp upstream
Rr630212	regulatory region 630212	within coordinates
Rr630213	regulatory region 630213	1210 bp proximal
Tssr56443	transcription start site region 56443	1698 bp upstream
Tssr60939	transcription start site region 60939	1505 bp upstream
Tssr60940	transcription start site region 60940	1326 bp upstream
Tssr60941	transcription start site region 60941	1042 bp upstream
Tssr60942	transcription start site region 60942	895 bp upstream
Tssr60943	transcription start site region 60943	785 bp upstream
Tssr60944	transcription start site region 60944	738 bp upstream
Tssr60945	transcription start site region 60945	89 bp downstream
Tssr60946	transcription start site region 60946	721 bp downstream