rs49442312 SNP Detail

Summary

• ID
  rs49442312
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:79405993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCCAATG GAGGCTTGTC
  CTGTGCCCTG ATTGATCCAT GAAAACTCAA ATAAATTTAT GCCCTATAAC GACTTGGGAC
  CTGCATCAGA CTTTGAGAGG TTCATCCAGT CCAGTGCTTT TTGTTGTATA TGCATCTCCA
  TTTCGCATCA CTTGCCTGAC TTTGAGCCTT CAGATCAGTG CCCCAAAGGT TATAGAGAAC
  A
  AAGTTATTAG AAGAAGCAAA ACAAAAAGGA AGCAAGATTT TGGTTTCTAG CCAGCCAGAC
  AAAAGGGTTT GATAACTACC GAGATCAAAT CCACCAACAT GGTTGAAACT AAGTACTAGG
  GGATGGAGCC ACAGAGCAAG GCTTGTATAC ACCAGAGAGT GTTGGGTTGT CAGATGGCTT
  TGCCTGACCT CCTTACTCTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146049490	ENSMUSSNP1078444	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325475922	CHEV_17_79497904	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49442312					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79405993 () rs orientation: forward

Symbol	Name	Function Class
Gm65520	predicted gene, 65520	within coordinates
Rr392979	regulatory region 392979	863 bp upstream
Rr531251	regulatory region 531251	1445 bp proximal