rs49443949 SNP Detail

Summary

• ID
  rs49443949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87208643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGCTGT GGGGTCAGAC
  TCAGAATCCA TGCATACATA GGCCATATAG ATAGAGCTCC TGTCATTTCT GCTGTCCTTC
  ATATGTGAAT GGCAGAAGAT GTAATTCAGC TAAAACAGCT AGAATCTTCC TTGGGACGGT
  GAGTACACCC TGTGCCTGCC CTAACATCAA GCAAGCTGAG GGCTTCATAG TTTAAATGCA
  R
  TCACTGGTAG TTCTTGTCTT CCCTGCTACT GGAGAAAACC TAAAAACCCT TGCTTGCCCG
  GGGCAGGAGA GATGGTTCAG TGGTTAAAAG TGCTGGCTGC TCCTCTAGAG GACCCAGATT
  CTATTGAGTC CTCTGGCCAC ATGATGTCTC TTACAACTAG CTGTAACTTC AGTTCCAAGG
  GTTCCAATGC TGTTTTCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60764000	NES16394050	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49443949					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60764000	NES16394050	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87208643 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Efhd1	EF hand domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr414772	regulatory region 414772			908 bp proximal
Rr414773	regulatory region 414773			1089 bp proximal
Rr414774	regulatory region 414774			1257 bp proximal
Tssr7837	transcription start site region 7837			836 bp upstream