rs49444828 SNP Detail

Summary

• ID
  rs49444828
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118405557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACCTGAGG AGAGCTGTCC CTGCCCCTCA CCTGCTGCAG
  CTCTCAGGAG AGCAAGCCCC CACACCTCAC CTGGACAGCA CAGTGGAGCT GACCCTGATG
  R
  CCAGGGCTCA GGTGAACTGG CCCCAAGGGT GTGAGCACGG GGGAGCTGGC CCAGCAATTT
  TTTCCCCCTT TGGTTTTTCA AGACAGGGTT TCTCTGTAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149162320	ENSMUSSNP3149105	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321662376	CHEV_5_118717501	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49444828					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118405557 () rs orientation: forward

Symbol	Name	Function Class
Gm25076	predicted gene, 25076	912 bp downstream
Gm73266	predicted gene, 73266	1751 bp upstream
Rr618847	regulatory region 618847	979 bp distal
Rr618848	regulatory region 618848	1333 bp proximal
Rr618849	regulatory region 618849	1702 bp proximal
Rr618850	regulatory region 618850	1773 bp proximal