rs49445158 SNP Detail

Summary

• ID
  rs49445158
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30255103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGTGGG TTGGGGGGCA
  CATTTATTGG GGTGGGGTTC CTGGGAAGGT CACTGCCGGT CATACATCTC CCGTAGGATC
  TTCATACTTT CTGAGTAGCG AAGCTGGTTC CGATGAGATG CCTCCTTCCA CCTAGGAAGG
  CAGAGGGAGG ATTTAGCAAC TGCTACAGAG GACACTGGGA CAAGCAGCAA GTGAGGCAGG
  S
  CACACTCACC TCTGGCGTAT GCGTTTCCAA CGTTGCATGT TGCGATAGAT AAGTGTGGAA
  GGAGAAGGTT CAGGCTCGGA AGGCTGCATG GACAGAGAGG CTCAGCTGGG TGACTGTGTC
  CTAGCCCTCC CAACATGCCC TGAAGCTCCA GGCCAGCCTT GGATACCTAC TTCATCATCG
  GGGGTACCCT CGGTCTCAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60990780	NES16136671	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49445158					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990780	NES16136671	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30255103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18810	CpG island 18810	1081 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	235 bp downstream
Lin37	lin-37 DREAM MuvB core complex component	within coordinates
Tssr65782	transcription start site region 65782	884 bp downstream
Tssr65783	transcription start site region 65783	818 bp downstream
Tssr65784	transcription start site region 65784	794 bp downstream
Tssr65785	transcription start site region 65785	739 bp downstream
Tssr65786	transcription start site region 65786	726 bp downstream
Tssr65787	transcription start site region 65787	631 bp downstream
Tssr71789	transcription start site region 71789	990 bp upstream
Tssr71790	transcription start site region 71790	848 bp upstream