rs49446456 SNP Detail

Summary

• ID
  rs49446456
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22791231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGA AATGATCTGT GTAATGTGGT
  W
  GAGATGACAA AGAAGCTGGA AGATC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145309957	ENSMUSSNP5383091	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		T
ss325324628	CHEV_17_22709217	CHEVERUD	SCREENING_POP	f	SNP				T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49446456					SNP	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22791231 () rs orientation: forward

Symbol	Name	Function Class
Rr392416	regulatory region 392416	840 bp upstream
Vmn2r111	vomeronasal 2, receptor 111	within coordinates