rs49446601 SNP Detail

Summary

• ID
  rs49446601
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78183270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC GAAAAACATT CCTAACTGGA ATGGGCTCAC ACTGGACAGT
  GCAGAATGAC TGACTCTTTG ACTCTTTGTG TCTGGAAGAA CTCATGAGTA TCTGGAGATA
  GGAACTGATT CCTGGAACCA CTCCTGCACA CTCAAGGGAT GCACAGCTGG GGATAGCAAG
  R
  ACCCTAAAAT GAAAGCACCA TCTAGAAAGA AAACATGACA ACCACATTAC TGTGTCCTTA
  AATCTTTCAC TTAGCATTAG CTTGATAATT CAAGTTGCTT CACTCTCAAG ATTGAGAAGT
  TCCTTTGTTT TAAAAAGGTG GTGGTGGTGG GGAAACAGAG CCAGACAGTG AGGGCAAGGT
  GCTGCATGCC TTTAATCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss144741453	ENSMUSSNP6428349	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49446601					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78183270 () rs orientation: forward

Symbol	Name	Function Class
D1Mit215	DNA segment, Chr 1, Massachusetts Institute of Technology 215	126 bp distal
Rr413697	regulatory region 413697	1520 bp proximal