rs49446948 SNP Detail

Summary

• ID
  rs49446948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:95261244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACCAAATAAC TAGATTCTAC ATTCTAGAAC ATACATCCCT CTGACACCCG TGTTGTGGAC
  CATGGATTCC AACAGAACTC TGAGCTTAAG AGAAGAGGCC GGGAGAAGTT CTCATAAATG
  CATAGAAGCC AAGCTTCAGG TTCAGTGCCA TAGCTCGGCT TTCCCCTGAA GGATGCTGAA
  Y
  TGACACAGCC CTTAACATTC CTTTACAGGA TTTCAGGCCT TTAATTACTC ATTTTCAGGA
  AATTACTTGG TCTGTGGAAG AAACAACAGT TTGCTTTGAA TTGAACCACA TGAAAGTTGG
  ACCCGTCACT TGGTCTCATG GGGACCCAAG CAGCACAATG GACCAGAGCC TGAGTCATGG
  ACAATTCTTG GTTACTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60247394	NES15746383	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49446948					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60247394	NES15746383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:95261244 () rs orientation: forward

Symbol	Name	Function Class
Erg	ETS transcription factor	within coordinates
Gm56622	predicted gene, 56622	1256 bp upstream
Rr520320	regulatory region 520320	1267 bp distal
Rr520321	regulatory region 520321	685 bp distal
Tssr142258	transcription start site region 142258	1362 bp upstream
Tssr142259	transcription start site region 142259	1287 bp upstream
Tssr142260	transcription start site region 142260	1001 bp upstream