rs49447050 SNP Detail

Summary

• ID
  rs49447050
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149417233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAC AATCACCCAC ACCACAAAAC
  M
  CACAGCACTC GTGCTTCACA GTGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148031438	ENSMUSSNP4389555	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss321425426	CHEV_4_148706885	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49447050					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149417233 () rs orientation: forward

Symbol	Name	Function Class
Tssr40324	transcription start site region 40324	1874 bp upstream
Ube4b	ubiquitination factor E4B	within coordinates
Ube4bos2	ubiquitination factor E4B, opposite strand 2	1863 bp upstream
Ube4bos3	ubiquitination factor E4B, opposite strand 3	1863 bp upstream