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rs49448015 SNP Detail
Summary
  • ID
    rs49448015
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr3:153536718 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCAGCAACC ACATGGTGGC
    TCACAACCAT CCGTAACAAG ATCTGACTCC CTCTTCTGGT GTGTCTGAAG ACAGCTACAG
    TGTACTTACA TATAATGATA AAATAAATAA AATTTAAAAA AAAAAAAAAA AAAAAGAATA
    CACAGTGTAG AGTTGAGGGG AAGAGAAGAT TTGAGCCCTA GAGAAGGATG GACGAGAGAC
    G
    ACAAATGTCA GTCAGCTACC CATCAGACAA GTGAGACAGT TACTGTGACA GATGCCTGGG
    ATGGAGCAAC TTAAAAAGCC GAGCTGTTCC TGCTCTTGCA GGTGTGGCTG CTGTGTCACA
    TGGATGTCAG TAGGTGGCAG AGGGGAGAGA GGCTATGTCT ATGCTGAGTG TTCTGACCTT
    CAGACATCTG AAGGATTAGT                                            
    
    G = G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
ss136113945 ENSMUSSNP5839368 ENSEMBL ENSEMBL_Sanger f SNP G
SNP Consensus Information
SNP Consensus Type
A/J
rs49448015 SNP G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:153536718 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm25757 predicted gene, 25757 89 bp upstream
Rr587767 regulatory region 587767 471 bp distal
Rr587768 regulatory region 587768 328 bp distal
Rr587769 regulatory region 587769 137 bp distal
Rr587770 regulatory region 587770 within coordinates
Rr587771 regulatory region 587771 123 bp proximal
Rr587772 regulatory region 587772 729 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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