rs49448161 SNP Detail

Summary

• ID
  rs49448161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34099941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACGCATA TGTACAAAGT
  TTTTAATAAA GCTAATGACA TAAAATTATG CTTTCATGGT TAATAAGAGT GTAGTCTTCC
  ATTTAAGAAA ACTGCAAAAT ATGAAGTAGT CATGGGTAGG TTGTAAAGTT AAAGTTTTGT
  TTTGTTTTTA AAGAAGACTA TGTCACCATT TTTTTTTTTA AAAACATTAC AGTGGTGTTA
  R
  TAAATGTTTC ATTGTGCCTA AAGTCATTTG CAACTTGAGT ATCTTCTGTT TAAGGTTCTG
  GCTTTATAGG TCTGATACAA ATCTTAACAT GATTCTATCA TAATAGAATC CTGTTACTCA
  TAATAACGTA CTTTTTAATG TAAAAAATGT GTAGCAAAAT TGTCCAGTGG TATCGTTTAA
  ACTGATTTCC CTTATTAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147537772	ENSMUSSNP2154756	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49448161					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34099941 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Tssr131017	transcription start site region 131017	264 bp downstream
Tssr133963	transcription start site region 133963	262 bp upstream