rs49448176 SNP Detail

Summary

• ID
  rs49448176
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41444525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTA GCCCAGGGGT GGGGGTGGGG
  G
  CATATGACTC TTTCAAATAT TCTAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss136357181	ENSMUSSNP5478479	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322926795	CHEV_9_41341312	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49448176					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41444525 () rs orientation: forward

Symbol	Name	Function Class
Gm48742	predicted gene, 48742	1142 bp upstream
Mir100	microRNA 100	1725 bp downstream
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Tssr84510	transcription start site region 84510	1730 bp downstream
Tssr84511	transcription start site region 84511	1208 bp downstream