rs49449268 SNP Detail

Summary

• ID
  rs49449268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121663337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTACATAA AAATTACTTT
  TTACATTAAG GAATAATTTT TCCAATTGTT AAAAACAGTT TTAAGCTGTT ACTACTGGGG
  CTCGTGGGGA AGGGTCTGCT CTTCGATCAC CTGCTTTACC ACCTCTGCCA GCTTCAATCG
  GTCAACTTTA TCTGTGAATC CACGGCCTGA AAGGCAAGAA AGAACAAGGT GAGCACAGCT
  Y
  CTCACGAGCC GAAATTCAGC CCACACTGTC CAGAAGCAGT TCAGAGGCCC CACTTTCAGG
  CAGCAACTGA GCTCTGAGCA GTTTCTCTAA GCCAGAGATC ACTGTATGTC TGACAACAGA
  CTCATACCCA AGCATATAAA ACTCCCACAC GTGTGTAAGA AAGCTACAAG TGGGTAGATG
  ACAGTCCAAA GATTCCAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60833805	NES16021457	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49449268					SNP	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60833805	NES16021457	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121663337 () rs orientation: forward

Symbol	Name	Function Class
Gm42878	predicted gene 42878	within coordinates
Gm71452	predicted gene, 71452	243 bp upstream
Mapkapk5	MAP kinase-activated protein kinase 5	within coordinates
Rr130931	regulatory region 130931	540 bp proximal
Tssr48584	transcription start site region 48584	244 bp upstream
Tssr53036	transcription start site region 53036	1950 bp downstream
Tssr53037	transcription start site region 53037	1986 bp downstream