rs49450216 SNP Detail

Summary

• ID
  rs49450216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:79394625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCACAC TCAAAATCTG
  TCGAATATCT CTGCAGACAG CTATGCTGTA GGCAACAGTT AGGTCTATCT GTGCTCATGT
  TAGCATCTGG TTCCCCTCTA GGAGGAACTA GGGAAGGCTT GTGCAGATCC TGGTATCATC
  TGGGCAGTGG TTTCCGTAGA CTTGACTAGA AGAGGGAAGT AAGGTTTTAG GTAAGGATAT
  Y
  CTCTTGGCTC CATGACCGTG TAATTCTCCT TTCCAAAAGA AAGAGCTACG GAGAGAATGG
  GGCATCCTCT TTAAGAGCCC AGTGGCTCAG CCTCGTTTTT CCACCCTGCA CCCCCTCTCC
  TCCTACCACC TCTCCACTCC TACTTCTATA TCATTTGGGG TGGAGGGCTG CTTTGTGACA
  TACTGGGTTT GACCAGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61025348	NES16102182	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49450216					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61025348	NES16102182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79394625 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19314	CpG island 19314	1648 bp distal
Pex11a	peroxisomal biogenesis factor 11 alpha	1746 bp upstream
Rr649701	regulatory region 649701	1704 bp distal
Rr649702	regulatory region 649702	1454 bp distal
Tssr67364	transcription start site region 67364	1708 bp downstream
Tssr67365	transcription start site region 67365	1690 bp downstream
Tssr73125	transcription start site region 73125	1901 bp upstream
Tssr73126	transcription start site region 73126	1881 bp upstream
Tssr73127	transcription start site region 73127	1844 bp upstream
Tssr73128	transcription start site region 73128	1789 bp upstream
Tssr73129	transcription start site region 73129	1764 bp upstream
Wdr93	WD repeat domain 93	Intron