rs49451971 SNP Detail

Summary

• ID
  rs49451971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117549613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGCAGA CACAGGTGTC
  ACCCTGAATA TCATCCCCCT TGTAATATAT GTACTAATAT CTACACTACT ACGCGGCAGA
  CAGCAGGCAG TGGCAGTATT TGCTGGCTCG TGTCTGCCTG AGACAGTCTA CGTGAGGCCA
  TTTCACATCT CTGGAGGCTG AAGATCCTTG CTCAGACTGA GACTGCCGTA GGCCATCACC
  R
  CTCTTCTGAG GGCAACGCTA ACATTCCAGA GTCTTTGCAA GACAACCTTT TAATTGTCCC
  CTCACCCACA CCTATCAGCC ACCTGCTTCT AGAAGCCCCA ACCCAACTCC CCTGCACCCC
  CTAGTTCAGG ATATTAGATC AGTTCAATTC CTGAGCCCTT TGAGTCTTAC ATTTTGTAAT
  GCTTTTTTTT TTTTAAGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss52226740	NES15329386	PERLEGEN	MM_PANEL2	f	SNP	G	G		A
ss323498913	CHEV_10_117150764	CHEVERUD	SCREENING_POP	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs49451971					SNP	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52226740	NES15329386	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117549613 () rs orientation: forward

Symbol	Name	Function Class
Gm67727	predicted gene, 67727	within coordinates
Rr212986	regulatory region 212986	188 bp proximal
Rr212987	regulatory region 212987	1988 bp proximal
Rr385357	regulatory region 385357	1157 bp downstream
Tssr95924	transcription start site region 95924	1952 bp downstream
Tssr99470	transcription start site region 99470	1530 bp downstream