rs49452167 SNP Detail

Summary

• ID
  rs49452167
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172890348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGACTTC CAGGAGAGAG
  ACGGCTGGGG TGGTGGTCCC TGCAACCAGG AAAAGCACCT GATACTCCCG TGGCTCTGGA
  CTTGCTGATC CAAGAGCAGG AGACAATTCC TTTGTCTCAG CCTTGGTGGC TTTGGTTTGT
  CACGACCAGT ACCAGTGAAG AACTCACTCA GTCACGGGGT GGGAGGGTCG TCTAGATGAC
  G
  GAGCTGGGGC GGGGACTAGG GCGGGCACTT GGCCTTTCCA TAGGCTCAGA GGGTTAAGGT
  ATTTGTCACC AAGTGACCTG GTGGAACTTG TCCTCTGACC ACTACATGAA CTGTGGTGTG
  TGTGTGCCCT CCCTATAGAA AGGAAAAAAA ATGAATGAAT GCATAAATAA ATAAATGAAT
  TCAATACAAA TTTAAAGTTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148328499	ENSMUSSNP6478090	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49452167					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172890348 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	1127 bp downstream
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	within coordinates
Rr367392	regulatory region 367392	1671 bp downstream
Rr571823	regulatory region 571823	1761 bp distal
Rr571824	regulatory region 571824	within coordinates
Rr571825	regulatory region 571825	985 bp proximal
Rr571826	regulatory region 571826	1560 bp proximal
Rr571827	regulatory region 571827	1993 bp proximal