rs49454286 SNP Detail

Summary

• ID
  rs49454286
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32725099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCCCTCAG CTGGGAGTTT TAATCTTCAG AATCTCTTTT
  AGTCCGTTCC AGCACGGCCG GATTCTTTGT TTCTGGAAGT CTTGTCTCCA CTCGGAACCT
  R
  GATTACTTGG AGGGAGAATT CTGCCAGGTT GTGCAGCTGG TAGGCAGAGG CTCGGATCCT
  TTCAGTCCGA ACTGGAAAAC ACTGCCTGCT GCCCTCTAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	MOLF/EiJ
ss62676842	NES17315338	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	MOLF/EiJ
rs49454286					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62676842	NES17315338	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32725099 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f17	cytochrome P450, family 4, subfamily f, polypeptide 17	305 bp upstream
D17Mit63	DNA segment, Chr 17, Massachusetts Institute of Technology 63	899 bp distal
Rr392523	regulatory region 392523	within coordinates
Rr525769	regulatory region 525769	within coordinates
Tssr143717	transcription start site region 143717	294 bp upstream
Tssr143718	transcription start site region 143718	321 bp upstream
Tssr143719	transcription start site region 143719	349 bp upstream