rs49454708 SNP Detail

Summary

• ID
  rs49454708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85591375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTT CAGACACCAG AGGCTTCCTC
  R
  ATCTGTTTGG TAGGCACAGG CCTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148271301	ENSMUSSNP4000144	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325042862	CHEV_15_85537604	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49454708					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85591375 () rs orientation: forward

Symbol	Name	Function Class
Gm34622	predicted gene, 34622	1697 bp downstream
Lncppara	long noncoding RNA near Ppara	within coordinates
Mirc31	microRNA cluster 31, including Mirlet7c-2 through Mirlet7b	within coordinates
Mirlet7b	microRNA let7b	145 bp upstream
Mirlet7c-2	microRNA let7c-2	477 bp downstream
Rr507292	regulatory region 507292	765 bp distal
Rr507293	regulatory region 507293	within coordinates
Rr507294	regulatory region 507294	1344 bp proximal