rs49455212 SNP Detail

Summary

• ID
  rs49455212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:41866155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGC CCTGGAGCCC TGGGGTTCCC
  R
  TGTCGTTAAA ACAACCTTCC ATAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148314827	ENSMUSSNP5603842	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49455212					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:41866155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15822	CpG island 15822	249 bp distal
Gm72243	predicted gene, 72243	within coordinates
Gm72274	predicted gene, 72274	1197 bp downstream
Rab28	RAB28, member RAS oncogene family	655 bp upstream
Rr399068	regulatory region 399068	421 bp downstream
Rr610697	regulatory region 610697	1671 bp distal
Rr610698	regulatory region 610698	702 bp distal
Rr610699	regulatory region 610699	270 bp distal
Rr610700	regulatory region 610700	within coordinates
Tssr46070	transcription start site region 46070	1634 bp downstream
Tssr50838	transcription start site region 50838	1896 bp upstream
Tssr50839	transcription start site region 50839	1383 bp upstream
Tssr50840	transcription start site region 50840	1131 bp upstream
Tssr50841	transcription start site region 50841	798 bp upstream
Tssr50842	transcription start site region 50842	683 bp upstream
Tssr50843	transcription start site region 50843	642 bp upstream