rs49455452 SNP Detail

Summary

• ID
  rs49455452
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:23119077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CGCTCGTCGT CCGAGGCCAG GGCAGGGCTA GCCGAAGCTC CGCAGCCACC
  K
  TCAAGTTTGG CCGCACCGCC CGGGCTGCCG TCGCCCGCAC CATGTCCGCG           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146216176	ENSMUSSNP3278763	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49455452					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23119077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	within coordinates
Gm56648	predicted gene, 56648	558 bp upstream
Gm59174	predicted gene, 59174	1086 bp downstream
Klf9	Kruppel-like transcription factor 9	mRNA-UTR
Rr405898	regulatory region 405898	812 bp downstream
Rr545290	regulatory region 545290	1560 bp distal
Rr545291	regulatory region 545291	610 bp distal
Rr545292	regulatory region 545292	477 bp distal
Tssr155578	transcription start site region 155578	1602 bp downstream
Tssr155579	transcription start site region 155579	872 bp downstream
Tssr155580	transcription start site region 155580	762 bp downstream
Tssr155581	transcription start site region 155581	746 bp downstream
Tssr155582	transcription start site region 155582	709 bp downstream
Tssr155583	transcription start site region 155583	680 bp downstream
Tssr155584	transcription start site region 155584	636 bp downstream
Tssr155585	transcription start site region 155585	576 bp downstream
Tssr155586	transcription start site region 155586	450 bp downstream
Tssr155587	transcription start site region 155587	46 bp downstream
Tssr155588	transcription start site region 155588	12 bp downstream
Tssr158621	transcription start site region 158621	1060 bp upstream
Tssr158622	transcription start site region 158622	740 bp upstream
Tssr158623	transcription start site region 158623	343 bp downstream
Tssr158624	transcription start site region 158624	657 bp downstream