rs49455625 SNP Detail

Summary

• ID
  rs49455625
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165482335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGCTGAGT GACCTACCAA CACGGGAAAG GAGAACATAA
  AGATGACAAG GCCAAGGAAA TTGTCAGGAA CAGGCTGGGG AGGGCACTGA GTTGTCCTTG
  S
  AGAACTTCCA AGGCATCCCC AGGATTCTCC TAAGGCAGAC AGGTGAATTT AAGGGGAATT
  TCTGGGAGCT AGTTGAAACA GACAGGTAGC GAGCAGTTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146004316	ENSMUSSNP3142082	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49455625					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165482335 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr372388	regulatory region 372388	1566 bp upstream
Rr422410	regulatory region 422410	706 bp distal
Rr422411	regulatory region 422411	949 bp distal
Rr422412	regulatory region 422412	622 bp proximal
Tssr9810	transcription start site region 9810	880 bp downstream
Tssr9811	transcription start site region 9811	504 bp upstream
Tssr9812	transcription start site region 9812	744 bp upstream