rs49456685 SNP Detail

Summary

• ID
  rs49456685
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:73956518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT TCTTATACGC TGATTTTTTT
  W
  TAATTTAAAT CAAAAGTAGT TTCAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137890830	ENSMUSSNP2647948	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss324099236	CHEV_12_75010731	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49456685					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73956518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4761	CpG island 4761	730 bp distal
Gm20235	predicted gene, 20235	811 bp upstream
Hif1a	hypoxia inducible factor 1, alpha subunit	Intron
Rr467871	regulatory region 467871	1830 bp distal
Rr467872	regulatory region 467872	250 bp distal
Rr467873	regulatory region 467873	1753 bp distal
Rr467874	regulatory region 467874	509 bp distal
Tssr113838	transcription start site region 113838	1774 bp downstream
Tssr113839	transcription start site region 113839	1729 bp downstream
Tssr113840	transcription start site region 113840	1678 bp downstream
Tssr113841	transcription start site region 113841	1574 bp downstream
Tssr113842	transcription start site region 113842	1508 bp downstream
Tssr113843	transcription start site region 113843	1363 bp downstream
Tssr113844	transcription start site region 113844	124 bp downstream
Tssr113845	transcription start site region 113845	341 bp upstream