rs49458244 SNP Detail

Summary

• ID
  rs49458244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99869179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCCACT CTGATCGGGA
  GTGGGTCCAC CACAAATCTG TTGGCCAGAA ATCATAACAC ACGAAGCTGA TTTACTGCTG
  CTCTTTAAAA AACAGGGGGA CTGGCAGGGA GCCACAGGCT GGCAGATGAA GGAGATTATA
  GGCGTTGTTT GACAGTGAAG TGGCTGGCAA GTGGGGGGCA CACAGCAAGT TTGACTGCAA
  R
  AGCACATACA AGTTAATGGC TGGCAGGAGA CAGACATGCA GGGAGTTGAC TGGCAGGACT
  TAAGAACATA GCAGATAGGT TGGTAATAAA CTGACTGACA GAGCTGACCT TCACCTCTGG
  TGGGTTGATG TGACCCGCCT TGGCAGCTGG TTGGTTGGCA CGAGCCAGCC TCACAGCCAG
  CTGGTAGACA CGGGGTCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132715929	ENSMUSSNP5901337	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss323830087	CHEV_11_99839667	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49458244					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99869179 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	within coordinates
Tssr110719	transcription start site region 110719	744 bp downstream