rs49458419 SNP Detail

Summary

• ID
  rs49458419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176715323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAATTGTG CACTTACACT
  GAAGGCCCTG GAGTCCGGCA CTGGTAAGGT GCTACACTTT AGAAGTGTGT GTGTTTGTTC
  TTCATTTCTT TTTGTAGTAT TCTCTGCCAC TCCACATTTT TAGGTGACCT TGAAAGGGAA
  CCCAGGCTGC ATGCATGCTA GCCCACTAGC CCAGTGGTAG AGCACAGCCG TTGAACCAGC
  R
  TCCCCTTCTT GGAGACTGAG TCTCACTGTG CCTCGGGGGC CACCATAGGA CTCCCAGGCT
  TAAGTGATCC TCCTACCTTG GCCTCCACCA CGTCTACCAG AAAACTTAAG ATTTTCAACA
  TTTCGAAATA CACAATAACA TTTTATTGGC AATGTTAGGA TCAAGTAGGA GTTTGTTTCC
  TAGAAATAAA TAATTGGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60349139	NES15853691	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49458419					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60349139	NES15853691	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176715323 () rs orientation: forward

Symbol	Name	Function Class
Gm37490	predicted gene, 37490	1750 bp upstream
Rr423927	regulatory region 423927	1861 bp distal
Sdccag8	serologically defined colon cancer antigen 8	within coordinates