rs49459649 SNP Detail

Summary

• ID
  rs49459649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18997249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGTGCA CTCACATACA
  TTAAATAAAT AAATAAATAA ATAAATCTTT AAAAAGAAAT AGCACCTAGA GACTTTACTT
  TGAACTGAGA TGGCACCAGG GTCTGGGACA TGGCAGGCAA CCCTGTACCA CTGACCTGCT
  GCCTTAGCCG CCTGTGGACT TTGCTTTGCC CAAATACAGC TGTGGAGCCC AGAATGGCCC
  R
  GAACTCTCCA TCCTCTTACC TTCTCAAAGG CTCACATTAC AAGTAAATGC CACCATGACC
  AACACAGGGA ACTCGGGGGA GGCTGGACAG ACAGACGTCT TGGTGTAGCA AGTGGTCGAG
  GAAACTTTGC AGAGAGGGGC TTTTCTACTC GGCATACGCC AGGCATCGAC AGTTCCCATC
  AGTCTGCCTC CATAGGTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148471731	ENSMUSSNP606481	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49459649					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18997249 () rs orientation: forward

Symbol	Name	Function Class
Tssr70882	transcription start site region 70882	1265 bp upstream
Tssr70883	transcription start site region 70883	1145 bp downstream
Tssr70884	transcription start site region 70884	1486 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates