rs49460706 SNP Detail

Summary

• ID
  rs49460706
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992481 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      G ATAAGTATAC CTTTGTGGGC CATAGTAAGA TCATGGCCAG
  TACCTTTACC GGTACATTCC AATTCTTCTA CCTTGCCTTT ATTTTTTGCA ACGGAATGTT
  W
  TTTGGATGCG CCTTGTGCAC GACAAACTCC TCAAGAGCCA CGGGTGTATA ATAGTACTAG
  TTTTCATTTG AATTATACAC TATGCTTTGT GCATAATGTG G                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132065148	ENSMUSSNP680112	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss136197943	ENSMUSSNP3442416	ENSEMBL	ENSEMBL_Sanger	r	SNP			T
ss137700675	ENSMUSSNP923421	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	T	T
ss139262417	ENSMUSSNP1245674	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss144805165	ENSMUSSNP6292248	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss145786758	ENSMUSSNP1958141	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	T
ss146709354	ENSMUSSNP3470367	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	T
ss146814089	ENSMUSSNP382885	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
ss147047158	ENSMUSSNP5699359	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss147933062	ENSMUSSNP2358276	ENSEMBL	ENSEMBL_Sanger	r	SNP	A
ss148337164	ENSMUSSNP5705736	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss148732364	ENSMUSSNP3005500	ENSEMBL	ENSEMBL_Sanger	r	SNP	T		T
ss148920981	ENSMUSSNP2652932	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	A	A
ss149061459	ENSMUSSNP355822	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49460706					SNP	A	?	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992481 () rs orientation: reverse

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	within coordinates
Gm69636	predicted gene, 69636	within coordinates