rs49461120 SNP Detail

Summary

• ID
  rs49461120
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87752356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGGGGAG CCCATCCCCG
  TGACTGTGAC CGTGACCAAC AACACCGACA AGGTTGTGAA GAAGATTAAA GTATCAGGTG
  GGACTCTCAT CTCTATACTG AGACTCGGGG CTTTCTAGAA TCCCTCAGCC TCATGCTATT
  TCCTAAGACC CACTCTAGCC TGGTAAGGCC CCGCCCCAAC AGTGCCCTTA GATCTGCCTG
  W
  TCCTGTTTTC ATTGATAGCA GCAGTTTTTG TTTTTGCTTT TGTTTTTGAG ACAGGGTTTC
  TCTAAGTAGT CCTAGCTGTC CTGGAACTCA CTTAATAAAC CAGGCTGGCC TCAAACTCAA
  AGATCTGCCT GCCCCTGTTT CCCCACGTGC TCAGAGGTAA AGGCATGCGC CACCACCGCT
  TGGCTGATAG CAGGATCTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60762276	NES16403515	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs49461120					SNP	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60762276	NES16403515	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87752356 () rs orientation: forward

Symbol	Name	Function Class
Rr371669	regulatory region 371669	1718 bp upstream
Rr414853	regulatory region 414853	323 bp proximal
Rr414854	regulatory region 414854	418 bp proximal
Sag	S-antigen, retina and pineal gland (arrestin)	Intron