rs49461391 SNP Detail

Summary

• ID
  rs49461391
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37695672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCAAAAAG CTAACACATA TGTAGTCTGG GGACATTAGT
  TAGCATCCAT AGTAAACCGA CGTATTTGTT TTGATTTTCT TTGGATGCCA GAAAAGTGCA
  G
  AGGGGTGCCT TCTTGAATTA AGGTGCATCT GTGAGTTCGG AAGGCATTTG TGTAAAAAAA
  TATCTTAGAT ACCTATTGCC CAGAAACAGA ATCGAAAGA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134809990	ENSMUSSNP3062626	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320711453	CHEV_3_37540445	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49461391					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37695672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	107 bp distal
Gm42922	predicted gene 42922	298 bp upstream
Rr575523	regulatory region 575523	1433 bp distal
Rr575524	regulatory region 575524	60 bp distal
Rr575525	regulatory region 575525	726 bp distal
Rr575526	regulatory region 575526	618 bp distal
Spry1	sprouty RTK signaling antagonist 1	Intron
Tssr28908	transcription start site region 28908	1830 bp downstream
Tssr28909	transcription start site region 28909	1611 bp downstream
Tssr28910	transcription start site region 28910	1580 bp downstream
Tssr28911	transcription start site region 28911	1559 bp downstream
Tssr28912	transcription start site region 28912	1537 bp downstream
Tssr28913	transcription start site region 28913	1743 bp upstream