rs49463174 SNP Detail

Summary

• ID
  rs49463174
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86743343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCAGTATCAT TTGGAATCAT TGAAATAATG GTTAAGAACT
  CCATTAATAG GTAAAAATAA AGAAATGGGA ATTTTCATCC CATCCACGAG ATGGTCATTT
  C
  TATATATATA TATAAACAAT GTATGTTTTT TAAAGCATGT TTTAAAACAA AACAATGACA
  TAAAAAAACT CAGATAATTA CTATGGACAG TTTATTAATT A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135449566	ENSMUSSNP2801217	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49463174					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86743343 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579397	regulatory region 579397			667 bp distal
Rr579398	regulatory region 579398			1400 bp proximal