rs49463960 SNP Detail

Summary

• ID
  rs49463960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48000809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAAAAT CCCCTACATA
  AAGGAGGAGG AAGAGGCTGT CCTGATGGTA CTGTTTGTGG CTGTTCCACA GACCACACTA
  GAGGCTCTGT CACTCCTACT CCACTCCTCT GCCAGTGGCA TTCCAGGGTG GACAGAGAAG
  GACAGGCCCC CTGGAAGCCC CCAGCTTTTG CCATAGGACC ATCTTTTCAG ACCATTCTCA
  R
  CCCGACCATC ACTTTCTCCC TGATCACTCT GGGCAGCTGG GACGACAGTA TTACCTACGG
  AGAGACCACC CCGCAGGTAG ACAAGAGGGC ACAGGAAGGC TGGCAGGCAG GTGCTTTTAC
  CCTTCCCCAG ATTTCTCTCC TTTAAGTTTG TCAGCATCAC TCCTTTTAAA TTTATAAGCA
  GTATCTTATT TCTCCATCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60884691	NES16039095	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49463960					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60884691	NES16039095	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48000809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17361	CpG island 17361	604 bp proximal
Zfp777	zinc finger protein 777	313 bp downstream